Publications

Chang YL; Rossetti M; Vlamakis H; Casero D; Sunga G; Harre N; Miller S; Humphries R; Stappenbeck T; Simpson KW; Sartor RB; Wu G; Lewis J; Bushman F; McGovern DPB; Salzman N; Borneman J; Xavier R; Huttenhower C; Braun J, 2019. A screen of Crohn's disease-associated microbial metabolites identifies ascorbate as a novel metabolic inhibitor of activated human T cells.  Mucosal Immunol 12(2):457-467

Franzosa EA; McIver LJ; Rahnavard G; Thompson LR; Schirmer M; Weingart G; Lipson KS; Knight R; Caporaso JG; Segata N; Huttenhower C, 2018. Species-level functional profiling of metagenomes and metatranscriptomes.  Nat Methods 15(11):962-968

Schirmer M; Denson L; Vlamakis H; Franzosa EA; Thomas S; Gotman NM; Rufo P; Baker SS; Sauer C; Markowitz J; Pfefferkorn M; Oliva-Hemker M; Rosh J; Otley A; Boyle B; Mack D; Baldassano R; Keljo D; LeLeiko N; Heyman M; Griffiths A; Patel AS; Noe J; Kugathasan S; Walters T; Huttenhower C; Hyams J; Xavier RJ, 2018. Compositional and Temporal Changes in the Gut Microbiome of Pediatric Ulcerative Colitis Patients Are Linked to Disease Course.  Cell Host Microbe 24(4):600-610.e4

Kolde R; Franzosa EA; Rahnavard G; Hall AB; Vlamakis H; Stevens C; Daly MJ; Xavier RJ; Huttenhower C, 2018. Host genetic variation and its microbiome interactions within the Human Microbiome Project.  Genome Med 10(1):6

Schirmer M; Franzosa EA; Lloyd-Price J; McIver LJ; Schwager R; Poon TW; Ananthakrishnan AN; Andrews E; Barron G; Lake K; Prasad M; Sauk J; Stevens B; Wilson RG; Braun J; Denson LA; Kugathasan S; McGovern DPB; Vlamakis H; Xavier RJ; Huttenhower C, 2018. Dynamics of metatranscription in the inflammatory bowel disease gut microbiome.  Nat Microbiol 3(3):337-346

Hall AB; Yassour M; Sauk J; Garner A; Jiang X; Arthur T; Lagoudas GK; Vatanen T; Fornelos N; Wilson R; Bertha M; Cohen M; Garber J; Khalili H; Gevers D; Ananthakrishnan AN; Kugathasan S; Lander ES; Blainey P; Vlamakis H; Xavier RJ; Huttenhower C, 2017. A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients.  Genome Med 9(1):103

Publication list retrieved from NCBI using ImpactPubs

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